PoplarV1, Main, Exploration, bibRecord, 001696

QTLs for Woolly Poplar Aphid (Phloeomyzus passerinii L.) Resistance Detected in an Inter-Specific Populus deltoides x P. nigra Mapping Population.

Identifieur interne : 001696 ( Main/Exploration ); précédent : 001695; suivant : 001697

QTLs for Woolly Poplar Aphid (Phloeomyzus passerinii L.) Resistance Detected in an Inter-Specific Populus deltoides x P. nigra Mapping Population.

Auteurs : Giorgia Carletti [Italie] ; Andrea Carra [Italie] ; Gianni Allegro [Italie] ; Lorenzo Vietto [Italie] ; Francesca Desiderio [Italie] ; Paolo Bagnaresi [Italie] ; Alberto Gianinetti [Italie] ; Luigi Cattivelli [Italie] ; Giampiero Valè [Italie] ; Giuseppe Nervo [Italie]

Source :

PloS one [ 1932-6203 ] ; 2016.

RBID : pubmed:27022954

Descripteurs français

KwdFr :
- Analyse de variance (MeSH), Animaux (MeSH), Annotation de séquence moléculaire (MeSH), Aphides (physiologie), Cartographie chromosomique (MeSH), Croisements génétiques (MeSH), Liaison génétique (MeSH), Locus de caractère quantitatif (génétique), Maladies des plantes (génétique), Maladies des plantes (immunologie), Maladies des plantes (parasitologie), Marqueurs génétiques (MeSH), Populus (génétique), Populus (immunologie), Populus (parasitologie), Résistance à la maladie (génétique), Spécificité d'espèce (MeSH), Séquence nucléotidique (MeSH).
MESH :
- génétique : Locus de caractère quantitatif, Maladies des plantes, Populus, Résistance à la maladie.
- immunologie : Maladies des plantes, Populus.
- parasitologie : Maladies des plantes, Populus.
- physiologie : Aphides.
- Analyse de variance, Animaux, Annotation de séquence moléculaire, Cartographie chromosomique, Croisements génétiques, Liaison génétique, Marqueurs génétiques, Spécificité d'espèce, Séquence nucléotidique.

English descriptors

KwdEn :
- Analysis of Variance (MeSH), Animals (MeSH), Aphids (physiology), Base Sequence (MeSH), Chromosome Mapping (MeSH), Crosses, Genetic (MeSH), Disease Resistance (genetics), Genetic Linkage (MeSH), Genetic Markers (MeSH), Molecular Sequence Annotation (MeSH), Plant Diseases (genetics), Plant Diseases (immunology), Plant Diseases (parasitology), Populus (genetics), Populus (immunology), Populus (parasitology), Quantitative Trait Loci (genetics), Species Specificity (MeSH).
MESH :
- chemical : Genetic Markers.
- genetics : Disease Resistance, Plant Diseases, Populus, Quantitative Trait Loci.
- immunology : Plant Diseases, Populus.
- parasitology : Plant Diseases, Populus.
- physiology : Aphids.
- Analysis of Variance, Animals, Base Sequence, Chromosome Mapping, Crosses, Genetic, Genetic Linkage, Molecular Sequence Annotation, Species Specificity.

Abstract

The genus Populus represents one of the most economically important groups of forest trees. It is composed by approximately 30 species used for wood and non-wood products, phytoremediation and biomass. Poplar is subjected to several biological and environmental threats although, compared to annual crops, we know far less about the genetic bases of biotic stress resistance. Woolly poplar aphid (Phloeomyzus passerinii) is considered a main pest of cultivated poplars in European and American countries. In this work we present two high density linkage maps in poplar obtained by a genotyping by sequencing (GBS) approach and the identification of QTLs involved in Ph. passerinii resistance. A total of 5,667 polymorphic markers (5,606 SNPs and 61 SSRs) identified on expressed sequences have been used to genotype 131 plants of an F1 population P ×canadensis obtained by an interspecific mate between Populus deltoides (resistant to woolly poplar aphid) and Populus nigra (susceptible to woolly poplar aphid). The two linkage maps, obtained following the two-way pseudo-testcross mapping strategy, have been used to investigate the genetic bases of woolly poplar aphid resistance. One major QTL and two QTLs with minor effects (mapped on LGV, LGXVI and LG XIX) explaining the 65.8% of the genetic variance observed in the progeny in response to Ph. passerinii attack were found. The high density coverage of functional markers allowed the identification of three genes belonging to disease resistance pathway as putative candidates for P. deltoides resistance to woolly poplar aphid. This work is the first report on genetic of woolly poplar aphid genetic resistance and the resistant loci associated markers identified represent a valuable tool in resistance poplar breeding programs.

DOI: 10.1371/journal.pone.0152569
PubMed: 27022954
PubMed Central: PMC4811529

Affiliations:

Italie

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 001856
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Le document en format XML

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<author><name sortKey="Desiderio, Francesca" sort="Desiderio, Francesca" uniqKey="Desiderio F" first="Francesca" last="Desiderio">Francesca Desiderio</name>
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<author><name sortKey="Vale, Giampiero" sort="Vale, Giampiero" uniqKey="Vale G" first="Giampiero" last="Valè">Giampiero Valè</name>
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<author><name sortKey="Nervo, Giuseppe" sort="Nervo, Giuseppe" uniqKey="Nervo G" first="Giuseppe" last="Nervo">Giuseppe Nervo</name>
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<country xml:lang="fr">Italie</country>
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<series><title level="j">PloS one</title>
<idno type="eISSN">1932-6203</idno>
<imprint><date when="2016" type="published">2016</date>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Analysis of Variance (MeSH)</term>
<term>Animals (MeSH)</term>
<term>Aphids (physiology)</term>
<term>Base Sequence (MeSH)</term>
<term>Chromosome Mapping (MeSH)</term>
<term>Crosses, Genetic (MeSH)</term>
<term>Disease Resistance (genetics)</term>
<term>Genetic Linkage (MeSH)</term>
<term>Genetic Markers (MeSH)</term>
<term>Molecular Sequence Annotation (MeSH)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (immunology)</term>
<term>Plant Diseases (parasitology)</term>
<term>Populus (genetics)</term>
<term>Populus (immunology)</term>
<term>Populus (parasitology)</term>
<term>Quantitative Trait Loci (genetics)</term>
<term>Species Specificity (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de variance (MeSH)</term>
<term>Animaux (MeSH)</term>
<term>Annotation de séquence moléculaire (MeSH)</term>
<term>Aphides (physiologie)</term>
<term>Cartographie chromosomique (MeSH)</term>
<term>Croisements génétiques (MeSH)</term>
<term>Liaison génétique (MeSH)</term>
<term>Locus de caractère quantitatif (génétique)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (immunologie)</term>
<term>Maladies des plantes (parasitologie)</term>
<term>Marqueurs génétiques (MeSH)</term>
<term>Populus (génétique)</term>
<term>Populus (immunologie)</term>
<term>Populus (parasitologie)</term>
<term>Résistance à la maladie (génétique)</term>
<term>Spécificité d'espèce (MeSH)</term>
<term>Séquence nucléotidique (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" xml:lang="en"><term>Genetic Markers</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term>
<term>Plant Diseases</term>
<term>Populus</term>
<term>Quantitative Trait Loci</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Locus de caractère quantitatif</term>
<term>Maladies des plantes</term>
<term>Populus</term>
<term>Résistance à la maladie</term>
</keywords>
<keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Maladies des plantes</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Plant Diseases</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="parasitologie" xml:lang="fr"><term>Maladies des plantes</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Plant Diseases</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Aphides</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Aphids</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Analysis of Variance</term>
<term>Animals</term>
<term>Base Sequence</term>
<term>Chromosome Mapping</term>
<term>Crosses, Genetic</term>
<term>Genetic Linkage</term>
<term>Molecular Sequence Annotation</term>
<term>Species Specificity</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de variance</term>
<term>Animaux</term>
<term>Annotation de séquence moléculaire</term>
<term>Cartographie chromosomique</term>
<term>Croisements génétiques</term>
<term>Liaison génétique</term>
<term>Marqueurs génétiques</term>
<term>Spécificité d'espèce</term>
<term>Séquence nucléotidique</term>
</keywords>
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<front><div type="abstract" xml:lang="en">The genus Populus represents one of the most economically important groups of forest trees. It is composed by approximately 30 species used for wood and non-wood products, phytoremediation and biomass. Poplar is subjected to several biological and environmental threats although, compared to annual crops, we know far less about the genetic bases of biotic stress resistance. Woolly poplar aphid (Phloeomyzus passerinii) is considered a main pest of cultivated poplars in European and American countries. In this work we present two high density linkage maps in poplar obtained by a genotyping by sequencing (GBS) approach and the identification of QTLs involved in Ph. passerinii resistance. A total of 5,667 polymorphic markers (5,606 SNPs and 61 SSRs) identified on expressed sequences have been used to genotype 131 plants of an F1 population P ×canadensis obtained by an interspecific mate between Populus deltoides (resistant to woolly poplar aphid) and Populus nigra (susceptible to woolly poplar aphid). The two linkage maps, obtained following the two-way pseudo-testcross mapping strategy, have been used to investigate the genetic bases of woolly poplar aphid resistance. One major QTL and two QTLs with minor effects (mapped on LGV, LGXVI and LG XIX) explaining the 65.8% of the genetic variance observed in the progeny in response to Ph. passerinii attack were found. The high density coverage of functional markers allowed the identification of three genes belonging to disease resistance pathway as putative candidates for P. deltoides resistance to woolly poplar aphid. This work is the first report on genetic of woolly poplar aphid genetic resistance and the resistant loci associated markers identified represent a valuable tool in resistance poplar breeding programs. </div>
</front>
</TEI>
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<Month>08</Month>
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<ArticleTitle>QTLs for Woolly Poplar Aphid (Phloeomyzus passerinii L.) Resistance Detected in an Inter-Specific Populus deltoides x P. nigra Mapping Population.</ArticleTitle>
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<Abstract><AbstractText>The genus Populus represents one of the most economically important groups of forest trees. It is composed by approximately 30 species used for wood and non-wood products, phytoremediation and biomass. Poplar is subjected to several biological and environmental threats although, compared to annual crops, we know far less about the genetic bases of biotic stress resistance. Woolly poplar aphid (Phloeomyzus passerinii) is considered a main pest of cultivated poplars in European and American countries. In this work we present two high density linkage maps in poplar obtained by a genotyping by sequencing (GBS) approach and the identification of QTLs involved in Ph. passerinii resistance. A total of 5,667 polymorphic markers (5,606 SNPs and 61 SSRs) identified on expressed sequences have been used to genotype 131 plants of an F1 population P ×canadensis obtained by an interspecific mate between Populus deltoides (resistant to woolly poplar aphid) and Populus nigra (susceptible to woolly poplar aphid). The two linkage maps, obtained following the two-way pseudo-testcross mapping strategy, have been used to investigate the genetic bases of woolly poplar aphid resistance. One major QTL and two QTLs with minor effects (mapped on LGV, LGXVI and LG XIX) explaining the 65.8% of the genetic variance observed in the progeny in response to Ph. passerinii attack were found. The high density coverage of functional markers allowed the identification of three genes belonging to disease resistance pathway as putative candidates for P. deltoides resistance to woolly poplar aphid. This work is the first report on genetic of woolly poplar aphid genetic resistance and the resistant loci associated markers identified represent a valuable tool in resistance poplar breeding programs. </AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Carletti</LastName>
<ForeName>Giorgia</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Council for Agricultural Research and Economics (CREA)-Research Unit for Intensive Wood Production, Casale Monferrato (AL), Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Carra</LastName>
<ForeName>Andrea</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Council for Agricultural Research and Economics (CREA)-Research Unit for Intensive Wood Production, Casale Monferrato (AL), Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Allegro</LastName>
<ForeName>Gianni</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Council for Agricultural Research and Economics (CREA)-Research Unit for Intensive Wood Production, Casale Monferrato (AL), Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Vietto</LastName>
<ForeName>Lorenzo</ForeName>
<Initials>L</Initials>
<AffiliationInfo><Affiliation>Council for Agricultural Research and Economics (CREA)-Research Unit for Intensive Wood Production, Casale Monferrato (AL), Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Desiderio</LastName>
<ForeName>Francesca</ForeName>
<Initials>F</Initials>
<AffiliationInfo><Affiliation>Council for Agricultural Research and Economics (CREA)-Genomics Research Centre, Fiorenzuola d'Arda (PC), Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Bagnaresi</LastName>
<ForeName>Paolo</ForeName>
<Initials>P</Initials>
<AffiliationInfo><Affiliation>Council for Agricultural Research and Economics (CREA)-Genomics Research Centre, Fiorenzuola d'Arda (PC), Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Gianinetti</LastName>
<ForeName>Alberto</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Council for Agricultural Research and Economics (CREA)-Genomics Research Centre, Fiorenzuola d'Arda (PC), Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cattivelli</LastName>
<ForeName>Luigi</ForeName>
<Initials>L</Initials>
<AffiliationInfo><Affiliation>Council for Agricultural Research and Economics (CREA)-Genomics Research Centre, Fiorenzuola d'Arda (PC), Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Valè</LastName>
<ForeName>Giampiero</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Council for Agricultural Research and Economics (CREA)-Genomics Research Centre, Fiorenzuola d'Arda (PC), Italy.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Council for Agricultural Research and Economics (CREA)-Rice Research Unit, Vercelli, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Nervo</LastName>
<ForeName>Giuseppe</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Council for Agricultural Research and Economics (CREA)-Research Unit for Intensive Wood Production, Casale Monferrato (AL), Italy.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
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<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
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<ArticleDate DateType="Electronic"><Year>2016</Year>
<Month>03</Month>
<Day>29</Day>
</ArticleDate>
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<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>PLoS One</MedlineTA>
<NlmUniqueID>101285081</NlmUniqueID>
<ISSNLinking>1932-6203</ISSNLinking>
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<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
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<MeshHeadingList><MeshHeading><DescriptorName UI="D000704" MajorTopicYN="N">Analysis of Variance</DescriptorName>
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<MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001042" MajorTopicYN="N">Aphids</DescriptorName>
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</MeshHeading>
<MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002874" MajorTopicYN="Y">Chromosome Mapping</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D003433" MajorTopicYN="N">Crosses, Genetic</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008040" MajorTopicYN="N">Genetic Linkage</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D058977" MajorTopicYN="N">Molecular Sequence Annotation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName>
<QualifierName UI="Q000469" MajorTopicYN="N">parasitology</QualifierName>
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<QualifierName UI="Q000469" MajorTopicYN="Y">parasitology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D040641" MajorTopicYN="N">Quantitative Trait Loci</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName>
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<Month>10</Month>
<Day>13</Day>
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<Month>03</Month>
<Day>16</Day>
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<Day>30</Day>
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<affiliations><list><country><li>Italie</li>
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<tree><country name="Italie"><noRegion><name sortKey="Carletti, Giorgia" sort="Carletti, Giorgia" uniqKey="Carletti G" first="Giorgia" last="Carletti">Giorgia Carletti</name>
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<name sortKey="Allegro, Gianni" sort="Allegro, Gianni" uniqKey="Allegro G" first="Gianni" last="Allegro">Gianni Allegro</name>
<name sortKey="Bagnaresi, Paolo" sort="Bagnaresi, Paolo" uniqKey="Bagnaresi P" first="Paolo" last="Bagnaresi">Paolo Bagnaresi</name>
<name sortKey="Carra, Andrea" sort="Carra, Andrea" uniqKey="Carra A" first="Andrea" last="Carra">Andrea Carra</name>
<name sortKey="Cattivelli, Luigi" sort="Cattivelli, Luigi" uniqKey="Cattivelli L" first="Luigi" last="Cattivelli">Luigi Cattivelli</name>
<name sortKey="Desiderio, Francesca" sort="Desiderio, Francesca" uniqKey="Desiderio F" first="Francesca" last="Desiderio">Francesca Desiderio</name>
<name sortKey="Gianinetti, Alberto" sort="Gianinetti, Alberto" uniqKey="Gianinetti A" first="Alberto" last="Gianinetti">Alberto Gianinetti</name>
<name sortKey="Nervo, Giuseppe" sort="Nervo, Giuseppe" uniqKey="Nervo G" first="Giuseppe" last="Nervo">Giuseppe Nervo</name>
<name sortKey="Vale, Giampiero" sort="Vale, Giampiero" uniqKey="Vale G" first="Giampiero" last="Valè">Giampiero Valè</name>
<name sortKey="Vale, Giampiero" sort="Vale, Giampiero" uniqKey="Vale G" first="Giampiero" last="Valè">Giampiero Valè</name>
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QTLs for Woolly Poplar Aphid (Phloeomyzus passerinii L.) Resistance Detected in an Inter-Specific Populus deltoides x P. nigra Mapping Population.

QTLs for Woolly Poplar Aphid (Phloeomyzus passerinii L.) Resistance Detected in an Inter-Specific Populus deltoides x P. nigra Mapping Population.

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